Automatic segmentation, detection and quantification of coronary artery stenoses on CTA

Accurate detection and quantification of coronary artery stenoses is an essential requirement for treatment planning of patients with suspected coronary artery disease. We present a method to automatically detect and quantify coronary artery stenoses in computed tomography coronary angiography. First, centerlines are extracted using a two-point minimum cost path approach and a subsequent refinement step. The resulting centerlines are used as an initialization for lumen segmentation, performed using graph cuts. Then, the expected diameter of the healthy lumen is estimated by applying robust kernel regression to the coronary artery lumen diameter profile. Finally, stenoses are detected and quantified by computing the difference between estimated and expected diameter profiles. We evaluated our method using the data provided in the Coronary Artery Stenoses Detection and Quantification Evaluation Framework. Using 30 testing datasets, the method achieved a detection sensitivity of 29 % and a positive predi

Genome-wide analysis of macrosatellite repeat copy number variation in worldwide populations: Evidence for differences and commonalities in size distributions and size restrictions

Background: Macrosatellite repeats (MSRs), usually spanning hundreds of kilobases of genomic DNA, comprise a significant proportion of the human genome. Because of their highly polymorphic nature, MSRs represent an extreme example of copy number variation, but their structure and function is largely understudied. Here, we describe a detailed study of six autosomal and two X chromosomal MSRs among 270 HapMap individuals from Central Europe, Asia and Africa. Copy number variation, stability and genetic heterogeneity of the autosomal macrosatellite repeats RS447 (chromosome 4p), MSR5p (5p), FLJ40296 (13q), RNU2 (17q) and D4Z4 (4q and 10q) and X chromosomal DXZ4 and CT47 were investigated. Results: Repeat array size distribution analysis shows that all of these MSRs are highly polymorphic with the most genetic variation among Africans and the least among Asians. A mitotic mutation rate of 0.4-2.2% was observed, exceeding meiotic mutation rates and possibly explaining the large size variability found for these MSRs. By means of a novel Bayesian approach, statistical support for a distinct multimodal rather than a uniform allele size distribution was detected in seven out of eight MSRs, with evidence for equidistant intervals between the modes. Conclusions: The multimodal distributions with evidence for equidistant intervals, in combination with the observation of MSR-specific constraints on minimum array size, suggest that MSRs are limited in their configurations and that deviations thereof may cause disease, as is the case for facioscapulohumeral muscular dystrophy. However, at present we cannot exclude that there are mechanistic constraints for MSRs that are not directly disease-related. This study represents the first comprehensive study of MSRs in different human populations by applying novel statistical methods and identifies commonalities and differences in their organization and function in the human genome

Plant Dispersal in a Temperate Stream by Fish Species With Contrasting Feeding Habits: The Role of Plant Traits, Fish Diet, Season, and Propagule Availability

Whether fish mediate plant dispersal in temperate freshwaters is largely unknown. A prerequisite for successful dispersal is ingestion and surviving the journey in the intestinal tract. This study asks whether plant propagules are being ingested under field conditions and what factors shape dispersal potential, focusing on differences across plant species and propagule form (seed or fragment), seasonal differences and plant and fish traits that facilitate dispersal. We focused on three common fish species reported to differ in foraging strategy. Fish were caught monthly over a 1-year period in a Dutch lowland stream. Before they were returned to the stream, fish were kept in water for 26 h and their feces were collected, resulting in 150 fecal samples. Excreted animal remains and plant propagules were identified and enumerated. Plant propagules were tested for viability. In total, 88,579 vegetative fragments of vascular plants, 316 of mosses and 14 of charophytes were identified. Viability was low (<<1%) except for mosses (53.5%). Roach (Rutilis rutilis) and Rudd (Scardinius erythrophthalmus) displayed a preference for filamentous algae and certain plant species (i.e., Elodea nuttallii and Lemna sp.), likely because they were more palatable. Of the 1,787 generative propagules of vascular plants that were identified, 120 germinated (6.7%), representing 15 species. Betula pendula, Juncus effusus, and Poa trivialis were most abundant. Tench (Tinca tinca) egested most seeds, despite being the least herbivorous species. Particularly, germination was high for seeds that were light (<1.07 mg) and that floated for a long time. Our results show that fish do ingest plant propagules under field conditions and that fish can contribute to vegetative dispersal of vascular plants and several aquatic and riparian moss species. Ingestion of propagules is affected by water temperature and season, their availability in the propagule bank, and their palatability. Both seed traits (related to buoyancy, size and hardness) and fish traits (related to size and identity) were important. Despite substantial dietary overlap, the three fish species displayed subtle differences in their diet, and together can act as vectors for the dispersal of a range of plant and moss species of freshwater systems

3D fusion of intravascular ultrasound and coronary computed tomography for in-vivo wall shear stress analysis: A feasibility study

Wall shear stress, the force per area acting on the lumen wall due to the blood flow, is an important biomechanical parameter in the localization and progression of atherosclerosis. To calculate shear stress and relate it to atherosclerosis, a 3D description of the lumen and vessel wall is required. We present a framework to obtain the 3D reconstruction of human coronary arteries by the fusion of intravascular ultrasound (IVUS) and coronary computed tomography angiography (CT). We imaged 23 patients with IVUS and CT. The images from both modalities were registered for 35 arteries, using bifurcations as landmarks. The IVUS images together with IVUS derived lumen and wall contours were positioned on the 3D centerline, which was derived from CT. The resulting 3D lumen and wall contours were transformed to a surface for calculation of shear stress and plaque thickness. We applied variations in selection of landmarks and investigated whether these variations influenced the relation between shear stress and plaque thickness. Fusion was successfully achieved in 31 of the 35 arteries. The average length of the fused segments was 36.4 ± 15.7 mm. The length in IVUS and CT of the fused parts correlated excellently (R2= 0.98). Both for a mildly diseased and a very diseased coronary artery, shear stress was calculated and related to plaque thickness. Variations in the selection of the landmarks for these two arteries did not affect the relationship between shear stress and plaque thickness. This new framework can therefore successfully be applied for shear stress analysis in human coronary arteries

The construct equivalence of the Job Diagnostic Survey for diverse South African cultural groups

ABSTRACT: The Job Diagnostic Survey (JDS) and the Job Characteristics Model (JCM) have been widely used in South African organisations. The purpose of this study was to determine whether the JDS is useful if it is applied to a particular population or to groups from highly dissimilar backgrounds. Cultural diversity research has revealed differences between the values, attitudes and leadership styles of people from different cultural groups. In this study, Hackman and Oldham’s JDS was applied to Black and White employees (n=66) to determine construct equivalence for these two cultural groups. Confirmatory factor analysis confirmed that there were no significant differences between the Black and White groups tested, suggesting that the JDS could be applied to different population groups. OPSOMMING: Die Pos-diagnostiese vraelys (JDS) en die Pos-kenmerke Model (JCM) word wydverspreid deur Suid-Afrikaanse organisasies gebruik. Die doel van hierdie studie was om te bepaal of die JDS van toepassing is op verskillende kultuurgroepe. Navorsing rakende kultuurdiversiteit het aangetoon dat daar verskille bestaan rakende die waardes, houdings en leierskapstyle van verskillende kultuurgroepe. In hierdie studie is die (JDS) van Hackman en Oldham toegepas op Swart- en Blanke werknemers (n=677) ten einde die konstruk-ekwivalensie daarvan bepaal. ’n Bevestigende faktorontleding het aangetoon dat daar geen betekenisvolle verskille bestaan tussen die Swart- en Blankegroepe wat getoets is nie. Die aanname word dus gemaak dat die JDS toegepas kan word op verskillende populasiegroepe

Specificity of Adenosine Inhibition of cAMP-Induced Responses in Dictyostelium Resembles That of the P Site of Higher Organisms

Adenosine acts as a cyclic AMP antagonist in Dictyostelium discoideum. It inhibits the binding of cyclic AMP to cell surface receptors and the induction of postaggregative differentiation by cyclic AMP. We investigated the nucleoside specificity and dose dependency of both inhibitory effects of adenosine. It was found that adenosine inhibits cyclic AMP binding and cyclic-AMP-induced differentiation with a Ki of about 300 µM. Alterations in the purine moiety of adenosine generally decrease the inhibitory effect of the molecule, whereas alterations in the ribose moiety are tolerated and in most cases even increase the inhibitory effect of the molecule on both cyclic AMP binding and differentiation induction. A strong correlation (r = 0.996, P < 0.01%) between the specificities for adenosine derivatives of these two inhibitory processes is demonstrated. The nucleoside specificity for the inhibition of cyclic AMP action in D. discoideum resembles that of the P site of higher organisms. In contrast to effects mediated by the P site of higher organisms, the effects of adenosine mediated by the Dictyostelium receptor cannot be prevented by inhibiting adenosine uptake; this makes it very likely that the adenosine receptor, which is involved in the effects of adenosine on cyclic AMP binding and differentiation induction, is located at the cell surface.